Volume 38 Issue 4
Jul.  2017
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Ian S. Logan. Pseudogenization of the Humanin gene is common in the mitochondrial DNA of many vertebrates. Zoological Research, 2017, 38(4): 198-202. doi: 10.24272/j.issn.2095-8137.2017.049
Citation: Ian S. Logan. Pseudogenization of the Humanin gene is common in the mitochondrial DNA of many vertebrates. Zoological Research, 2017, 38(4): 198-202. doi: 10.24272/j.issn.2095-8137.2017.049

Pseudogenization of the Humanin gene is common in the mitochondrial DNA of many vertebrates

doi: 10.24272/j.issn.2095-8137.2017.049
  • Received Date: 2017-05-20
  • Rev Recd Date: 2017-07-05
  • Publish Date: 2017-07-18
  • In the human the peptide Humanin is produced from the small Humanin gene which is embedded as a gene-within-a-gene in the 16S ribosomal molecule of the mitochondrial DNA (mtDNA). The peptide itself appears to be significant in the prevention of cell death in many tissues and improve cognition in animal models. By using simple data mining techniques, it is possible to show that 99.4% of the human Humanin sequences in the GenBank database are unaffected by mutations. However, in other vertebrates, pseudogenization of the Humanin gene is a common feature; occurring apparently randomly in some species and not others. The persistence, or loss, of a functional Humanin gene may be an important factor in laboratory animals, especially if they are being used as animal models in studies of Alzheimer's disease (AD). The exact reason why Humanin underwent pseudogenization in some vertebrate species during their evolution remains to be determined. This study was originally planned to review the available information about Humanin and it was a surprise to be able to show that pseudogenization has occurred in a gene in the mtDNA and is not restricted solely to chromosomal genes.
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  • [1]
    Anderson S, Bankier AT, Barrell BG, de Bruijn MHL, Coulson AR, Drouin J, Eperon IC, Nierlich DP, Roe BA, Sanger F, Schreier PH, Smith AJH, Staden R, Young IG. 1981. Sequence and organization of the human mitochondrial genome. Nature, 290(5806): 457-465.
    [2]
    Andrews RM, Kubacka I, Chinnery PF, Lightowlers RN, Turnbull, DM, Howell N. 1999. Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA. Nature Genetics, 23(2): 147.
    [3]
    Bandelt HJ, Kloss-Brandstätter A, Richards MB, Yao YG, Logan I. 2014.The case for the continuing use of the revised Cambridge Reference Sequence (rCRS) and the standardization of notation in human mitochondrial DNA studies. Journal of Human Genetics, 59(2): 66-77.
    [4]
    Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL. 2005.GenBank. Nucleic Acids Research, 33(S1): D34-D38.
    [5]
    Bodzioch M, Lapicka-Bodzioch K, Zapala B, Kamysz W, Kiec-Wilk B, Dembinska-Kiec A. 2009. Evidence for potential functionality of nuclearlyencoded humanin isoforms. Genomics, 94(4): 247-256.
    [6]
    Cohen A, Lerner-Yardeni J, Meridor D, Kasher R, Nathan I, Parola AH. 2015. Humanin Derivatives Inhibit Necrotic Cell Death in Neurons.Molecular Medicine, 21(1): 505-514.
    [7]
    Hashimoto Y, Niikura T, Tajima H, Yasukawa T, Sudo H, Ito Y, Kita Y, Kawasumi M, Kouyama K, Doyu M, Sobue G, Koide T, Tsuji S, Lang J, Kurokawa K, Nishimoto I. 2001. A rescue factor abolishing neuronal cell death by a wide spectrum of familial Alzheimer’s disease genes and Aβ.Proceedings of the National Academy of Sciences of the United States of America, 98(11), 6336–6341.
    [8]
    Hashimoto Y, Nawa M, Kurita M, Tokizawa M, Iwamatsu A, Matsuoka M. 2013. Secreted calmodulin-like skin protein inhibits neuronal death in cellbased Alzheimer's disease models via the heterotrimeric Humanin receptor.Cell Death and Disease, 4(3): e555.
    [9]
    Jacq C, Miller JR, Brownlee GG. 1977. A pseudogene structure in 5S DNA of Xenopus laevis. Cell, 12(1): 109-120.
    [10]
    Lee C, Yen K, Cohen P. 2013. Humanin: a harbinger of mitochondrialderived peptides? Trends in Endocrinology & Metabolism, 24(5): 222-228.
    [11]
    Li X, Zhao WC, Yang HQ, Zhang JH, Ma JJ. 2013. S14G-humanin restored cellular homeostasis disturbed by amyloid-beta protein. Neural Regeneration Research, 2013. 8(27): 2573-2780.
    [12]
    Matsuoka M. 2015. Protective effects of Humanin and calmodulin-like skin protein in Alzheimer's disease and broad range of abnormalities. Molecular Neurobiology, 51(3): 1232-1239.
    [13]
    Mighell AJ, Smith NR, Robinson PA, Markham AF. 2000. Vertebrate pseudogenes. Federation of European Biochemical Societies Letters, 468(2-3): 109-114.
    [14]
    Murakami M, Nagahama M, Maruyama T, Niikura T. 2017. Humanin ameliorates diazepam-induced memory deficit in mice. Neuropeptides, 62:65-70.
    [15]
    Pruitt KD, Tatusova T, Maglott DR. 2007. NCBI reference sequences (RefSeq):a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Research, 35(Database issue): D61- D65.
    [16]
    Romeo M, Stravalaci M, Beeg M, Rossi A, Fiordaliso F, Corbelli A, Salmona M, Gobbi M, Cagnotto A, Diomede L. 2017. Humanin Specifically Interacts with Amyloid-β Oligomers and Counteracts Their in vivo Toxicity. Journal of Alzheimer's Disease, 57(3): 857-871.
    [17]
    Secher B, Fregel R, Larruga JM, Cabrera VM, Endicott P, Pestano JJ, González AM. 2014. The history of the North African mitochondrial DNA haplogroup U6 gene flow into the African, Eurasian and American continents. BioMed Central Evolutionary Biology, 14: 109.
    [18]
    Stark TL, Liberles DA, Holland BR, O'Reilly MM. 2017. Analysis of a mechanistic Markov model for gene duplicates evolving under subfunctionalization. BioMed Central Evolutionary Biology, 17(1): 38.
    [19]
    Subramanian S, Mohandesan E, Millar CD, Lambert DM. 2015. Distancedependent patterns of molecular divergences in Tuatara mitogenomes.Scientific Reports. 5: 8703.
    [20]
    Tajima H, Niikura T, Hashimoto Y, Ito Y, Kita Y, Terashita K, Yamazaki K, Koto A, Aiso S, Nishimoto I. 2002. Evidence for in vivo production of Humanin peptide, a neuroprotective factor against Alzheimer's diseaserelated insults. Neuroscience Letters, 324(3): 227-231.
    [21]
    Terashita K, Hashimoto Y, Niikura T, Tajima H, Yamagishi Y, Ishizaka M, Kawasumi M, Chiba T, Kanekura K, Yamada M, Nawa M, Kita Y, Aiso S, Nishimoto I. 2003. Two serine residues distinctly regulate the rescue function of Humanin, an inhibiting factor of Alzheimer's disease-related neurotoxicity: functional potentiation by isomerization and dimerization.Journal of Neurochemistry, 85(6): 1521-1538.
    [22]
    van Oven M, Kayser M. 2009. Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation. Human Mutation, 30(2): E386-E394.
    [23]
    Wu M, Shi H, He YX, Yuan L, Qu XS, Zhang J, Wang ZJ, Cai HY, Qi JS. 2017 Colivelin Ameliorates Impairments in Cognitive Behaviors and Synaptic Plasticity in APP/PS1 Transgenic Mice. Journal of Alzheimer's Disease, 59(3): 1067-1078.
    [24]
    Xiao J, Liu R, Chen CS. 2017. Tree shrew (Tupaia belangeri) as a novel non-human primate laboratory disease animal model. Zoological Research, 38(3): 127-137.
    [25]
    Xu Y, Zhu SW, Li QW. 2016. Lamprey: a model for vertebrate evolutionary research. Zoological Research, 37(5): 263-269.
    [26]
    Yao YG, Salas A, Logan I, Bandelt HJ. 2009. mtDNA data mining in GenBank needs surveying. American Journal of Human Genetics, 85(6):929-933.
    [27]
    Yao, YG. 2017. Creating animal models, why not use the Chinese tree shrew (Tupaia belangeri chinensis)? Zoological research, 38 (3): 118-126.
    [28]
    Zaki MJ, Karypis G, Yang J. 2007. Data Mining in Bioinformatics (BIOKDD).Algorithms for Molecular Biology, 2: 4.
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