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Zhi-Qiang Han, Tian-Xiang Gao, Fang-Rui Lou, Qi Liu. Charybdis japonica genome provides insights into desiccation adaptation and sex-determining region. Zoological Research, 2022, 43(6): 927-930. doi: 10.24272/j.issn.2095-8137.2022.155
Citation: Zhi-Qiang Han, Tian-Xiang Gao, Fang-Rui Lou, Qi Liu. Charybdis japonica genome provides insights into desiccation adaptation and sex-determining region. Zoological Research, 2022, 43(6): 927-930. doi: 10.24272/j.issn.2095-8137.2022.155

Charybdis japonica genome provides insights into desiccation adaptation and sex-determining region

doi: 10.24272/j.issn.2095-8137.2022.155
Raw sequencing data (including PacBio, Hi-C, Survey, and RNA-seq reads) for C. japonica genome were deposited at the National Center for Biotechnology Information (NCBI) sequence read archive (SRA) (SRR16072374, SRR16072376, SRR16072375, and SRR16078881) under BioProjectID PRJNA766329. Raw whole-genome resequencing data of 20 C. japonica were also deposited in the SRA (SRR16894624–SRR16894643) under BioProjectID PRJNA779101. Genomic data were collected from the Genome Sequence Archive (GSA) database (https://ngdc.cncb.ac.cn/gwh/Assembly/25212/show) (Accession No. GWHBISL00000000). Genomic data were also archived in the Science Data Bank database (DOI: 10.57760/sciencedb.j00139.00026).
Supplementary data to this article can be found online.
The authors declare that they have no competing interests.
Z.Q.H. and F.R.L. conceived and managed the project. Z.Q.H. and T.X.G. collected the sequencing samples. Q.L. extracted the DNA/RNA and performed genome sequencing. F.R.L. analyzed the data. Z.Q.H. and F.R.L. wrote the manuscript. All authors read and approved the final version of the manuscript.
Funds:  This work was supported by the Zhejiang Provincial Natural Science Foundation of China (LR21D060003) and National Natural Science Foundation of China (32070513)
More Information
  • Corresponding author: E-mail: lfr199202@163.com
  • Received Date: 2022-06-17
  • Accepted Date: 2022-09-19
  • Published Online: 2022-09-20
    Raw sequencing data (including PacBio, Hi-C, Survey, and RNA-seq reads) for C. japonica genome were deposited at the National Center for Biotechnology Information (NCBI) sequence read archive (SRA) (SRR16072374, SRR16072376, SRR16072375, and SRR16078881) under BioProjectID PRJNA766329. Raw whole-genome resequencing data of 20 C. japonica were also deposited in the SRA (SRR16894624–SRR16894643) under BioProjectID PRJNA779101. Genomic data were collected from the Genome Sequence Archive (GSA) database (https://ngdc.cncb.ac.cn/gwh/Assembly/25212/show) (Accession No. GWHBISL00000000). Genomic data were also archived in the Science Data Bank database (DOI: 10.57760/sciencedb.j00139.00026).
    Supplementary data to this article can be found online.
    The authors declare that they have no competing interests.
    Z.Q.H. and F.R.L. conceived and managed the project. Z.Q.H. and T.X.G. collected the sequencing samples. Q.L. extracted the DNA/RNA and performed genome sequencing. F.R.L. analyzed the data. Z.Q.H. and F.R.L. wrote the manuscript. All authors read and approved the final version of the manuscript.
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  • [1]
    Allen BJ, Rodgers B, Tuan YH, Levinton JS. 2012. Size-dependent temperature and desiccation constraints on performance capacity: implications for sexual selection in a fiddler crab. Journal of Experimental Marine Biology and Ecology, 438: 93−99. doi: 10.1016/j.jembe.2012.09.009
    [2]
    Beck M, Malmström JA, Lange V, Schmidt A, Deutsch EW, Aebersold R. 2009. Visual proteomics of the human pathogen Leptospira interrogans. Nature Methods, 6(11): 817–823.
    [3]
    Gao SH, Yu HY, Wu SY, Wang S, Geng JN, Luo YF, et al. 2018. Advances of sequencing and assembling technologies for complex genomes. Hereditas, 40(11): 944−963. (in Chinese)
    [4]
    Kanzok SM, Fechner A, Bauer H, Ulschmid JK, Müller HM, Botella-Munoz J, et al. 2001. Substitution of the thioredoxin system for glutathione reductase in Drosophila melanogaster. Science, 291(5504): 643–646.
    [5]
    Laity JH, Lee BM, Wright PE. 2001. Zinc finger proteins: new insights into structural and functional diversity. Current Opinion in Structural Biology, 11(1): 39−46. doi: 10.1016/S0959-440X(00)00167-6
    [6]
    Lou FR, Wang YJ, Han ZQ, Shui BN. 2022. Comparative transcriptome reveals the molecular regulation mechanism of Charybdis japonica to high- and low-temperature stresses. Frontiers in Marine Science, 9: 849485. doi: 10.3389/fmars.2022.849485
    [7]
    Kipreos ET, Pagano M. 2000. The F-box protein family. Genome Biology, 1: 30021−30027.
    [8]
    Martens LK, Kirschner KM, Warnecke C, Scholz H. 2007. Hypoxia-inducible factor-1 (HIF-1) is a transcriptional activator of the TrkB neurotrophin receptor gene. Journal of Biological Chemistry, 282(19): 14379−14388. doi: 10.1074/jbc.M609857200
    [9]
    Roberts JZ, Holohan C, Sessler T, Fox J, Crawford N, Riley JS, et al. 2020. The SCFSkp2 ubiquitin ligase complex modulates TRAIL-R2-induced apoptosis by regulating FLIP(L). Cell Death & Differentiation, 27(9): 2726−2741.
    [10]
    Ryu MY, Cho SK, Kim WT. 2010. The Arabidopsis C3H2C3-type RING E3 ubiquitin ligase AtAIRP1 is a positive regulator of an abscisic acid-dependent response to drought stress. Plant Physiology, 154(4): 1983−1997. doi: 10.1104/pp.110.164749
    [11]
    Takai R, Matsuda N, Nakano A, Hasegawa K, Akimoto C, Shibuya N, et al. 2002. EL5, a rice N-acetylchitooligosaccharide elicitor-responsive RING-H2 finger protein, is a ubiquitin ligase which functions in vitro in co-operation with an elicitor-responsive ubiquitin-conjugating enzyme, OsUBC5b. The Plant Journal, 30(4): 447−455. doi: 10.1046/j.1365-313X.2002.01299.x
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