Volume 32 Issue 4
Jul.  2011
Turn off MathJax
Article Contents
YANG Hui, HUANG Yuan. Analysis of the complete mitochondrial genome sequence of Pielomastax zhengi. Zoological Research, 2011, 32(4): 353-362. doi: 10.3724/SP.J.1141.2011.04353
Citation: YANG Hui, HUANG Yuan. Analysis of the complete mitochondrial genome sequence of Pielomastax zhengi. Zoological Research, 2011, 32(4): 353-362. doi: 10.3724/SP.J.1141.2011.04353

Analysis of the complete mitochondrial genome sequence of Pielomastax zhengi

doi: 10.3724/SP.J.1141.2011.04353
More Information
  • Author Bio:

    YANG Hui

  • Corresponding author: HUANG Yuan
  • Received Date: 2011-01-06
  • Rev Recd Date: 2011-03-28
  • Publish Date: 2011-08-22
  • ThecompletemitochondrialgenomesequenceofPielomastaxzhengiwasdeterminedbyusinglongPCRandconservedprimerwalkingapproaches.TheresultsshowedthattheentiremitochondrialgenomeofPielomastaxzhengiis15602bplongwithA+Tcontentof71.8%.All37genesareconservedinthepositionsobservedinthoseofLocustamigratoria.Allthegenesarecloselyassembledbyleaving10intergenicspacersinbetween.Thoseintergenicspacersare47bpintotal(excludingtheA+Trichregion),withindividualsizerangesfrom1bpto20bp.Inaddition,thereareatotalof52bpoverlappingsequencesamong14genes,rangingfrom1−8bp.Allprotein-codinggenesstartwithatypicalinitiationcodonininsects,ATN.Twelveprotein-codinggenesusetheusualTAAandTAGterminationcodons,whereas,theND5geneshaveanincompleteterminationcodon(T).ExceptthetRNASer(AGN),whoseDHUarmisabsent;alltheother21tRNAgeneshavetypicalclover-leafsecondarystructures.ButinPielomastaxzhengi,thesecondarystructuresoffivetRNA(tRNACys,tRNALys,tRNAPhe,tRNAPro,tRNAArg)genescannotbepredictedbytheconventionalmethodsastheyhaveonly3−4,ratherthan5basepairsintheTψCarm,while,thetRNALysandtRNAArghaveonly4basepairsintheanticodearm.ThepredictedsecondarystructuresoflrRNAandsrRNAhave6domainswith44helicesand3domainswith30helices,respectively.TheresultsoftherRNAsecondarystructurecomparisonshowedthatPielomastaxzhengiismorecloselyrelatedwithLocustamigratoriatibetensisthanRuspoliadubia.Likemost&
  • loading
  • [1]
     Ballard JWO, Dean MD. 2001. The mitochondrial genome: mutation, selection and recombination[J]. Curr Opin Genet Dev, 11: 667-672.
    [2]
     Bonfield JK, Smith KF, Staden R. 1995. A new DNA sequence assembly program [J]. Nucleic Acids Res, 24: 4992-4999.
    [3]
     Dang JP, Liu N, Ye W, Huang Y. 2008. Complete mitochondrial genome sequence of Gastrimargus marmoratus (Thunberg) (Orthoptera : Acridoidea) [J]. Acta Entomol Sin, 51(7): 671-680. [党江鹏, 刘 念, 叶 伟, 黄 原. 2008. 云斑车蝗线粒体基因组全序列测定与分析. 昆虫学报, 51(7): 671-680.]
    [4]
     Ding FM, Shi HW, Huang Y. 2007. Complete mitochondrial genome and secondary structures of lrRNA and srRNA of Atractomorpha sinensis (Orthoptera, Pyrgomorphidae)
    [J]. Zool Res, 28(6): 580-588. [丁方美, 师红雯, 黄 原. 2007. 短额负蝗线粒体基因组及其lrRNA 和srRNA 二级结构分析. 动物学研究, 28(6): 580-588]
    [6]
     Gao J, Cheng CH, Huang Y. 2009. Analysis of complete mitochondrial genome sequence of Aeropus licenti Chang [J]. Zool Res, 30(6): 603-612. [高佳, 程春花, 黄原. 2009. 李氏大足蝗线粒体全基因组序列分析. 动物学研究, 30(6):603-612].
    [7]
     Goddard JM, Wolstenholme DR. 1978. Origin and direction of replication in mitochondrial DNA molecules from Drosophila melanogaster [J]. Proc Natl Acad Sci USA, 75(8): 3886-3890.
    [8]
     Huang Y, Liu N, Lu HM, 2010. Research progress in mitochondrial genomes of the Orthoptera insects [J]. Acta Entomol Sin, 53(5) : 581-586. [黄原, 刘念, 卢慧甍. 直翅目昆虫线粒体基因组研究进展. 昆虫学报, 53(5) : 581-586.]
    [9]
     Huang JH, Huang Y, Zhou SY. 2009. Check list of Chinese species of superfamily Eumastacoidea (Orthoptera: Caelifera) [J]. J Guangxi Normal Univ, 27(1): 84-87.
    [10]
    [黄建华, 黄 原, 周善义. 2009. 中国蜢总科昆虫名录. 广西师范大学学报, 27(1): 84-87.]
    [11]
     Jiang DY. 2010. Determination and analysis of four complete mitochondrial genome sequences of locust populations [D]. College of Life Sciences, Xi’an Shaanxi Normal University. [江东洋. 2010. 中国四种飞蝗线粒体基因组序列的测定与分析 [D]. 西安: 陕西师范大学生命科学学院.]
    [12]
     Liu N, Hu J, Huang Y. 2006. Amplification of grasshoppers complete mitochondrial genomes using long PCR [J]. Chn J Zool, 41: 61-65.[刘念, 胡 靖, 黄 原. 2006. 应用长PCR 扩增蝗虫线粒体全基因组. 动物学杂志, 41: 61-65.]
    [13]
     Saito S, Tamura K, Aotsuka T. 2005. Replication origin of mitochondrial DNA in insects[J]. Genetics, 171(4): 1695-1705.
    [14]
     Shi HW, Ding FM, Huang Y. 2008. Complete sequencing and analysis of mtDNA in Phlaeoba albonema Zheng [J]. Chn J Biochem Mol Biol, 24 (7): 604-611.
    [15]
     Simon C, Buckley TR, Frati F, Stewart JB, Beckenbach AT. 2006. Incorporating molecular evolution into phylogenetic analysis, and a new compilation of conserved polymerase chain reaction primers for animal mitochondrial DNA [J]. Annu Rev Ecol Evol Syst, 37:545–579.
    [16]
     Wolstenholme DR, 1992. Animal mitochondrial DNA: structure and evolution [J]. Int Rev Cytol, 141: 173-216.
    [17]
     Yokobori S, Pääbo S. 1995. Transfer RNA editing in land snail mitochondria [J]. Proc Natl Acad. Sci USA, 92: 10432-10435.
    [18]
     Ye W, Dang JP, Xie LD, Huang Y. 2008. Complete mitochondrial genome of Teleogryllus emma (Orthoptera: Gryllidae) with a new gene order in Orthoptera [J]. Zool Res, 29(3): 236-244. [叶 伟, 党江鹏, 谢令德, 黄 原. 2008. 黄脸油葫芦线粒体基因组:一种新的基因排列方式. 动 物 学 研 究, 29(3):236-244.]
    [19]
     Zhong J, Li G, Liu ZQ, Li QW, Wang YQ. 2005. Gene rearrangement of mitochondrial genome in the vertebrate [J]. Acta Genet Sin, 32(3): 322-330.
    [20]
    [钟 婧, 李 光, 刘忠权, 李庆伟, 王义权. 2005. 脊椎动物线粒体DNA 的基因重排. 遗传学报, 32 (3): 322-330.]
    [21]
     Zhou ZJ, Huang Y, Shi FM. 2007. The mitochondrial genome of Ruspolia dubia (Orthoptera: Conocephalidae) contains a short A+T-rich region of 70 bp in length [J]. Genome, 50: 855-866.
  • Relative Articles

    [1] Christian Roos, Kristofer M. Helgen, Roberto Portela Miguez, Naw May Lay Thant, Ngwe Lwin, Aung Ko Lin, Aung Lin, Khin Mar Yi, Paing Soe, Zin Mar Hein, Margaret Nyein Nyein Myint, Tanvir Ahmed, Dilip Chetry, Melina Urh, E. Grace Veatch, Neil Duncan, Pepijn Kamminga, Marcus A. H. Chua, Lu Yao, Christian Matauschek, Dirk Meyer, Zhi-Jin Liu, Ming Li, Tilo Nadler, Peng-Fei Fan, Le Khac Quyet, Michael Hofreiter, Dietmar Zinner, Frank Momberg. Mitogenomic phylogeny of the Asian colobine genus Trachypithecus with special focus on Trachypithecus phayrei (Blyth, 1847) and description of a new species. Zoological Research, 2020, 41(6): 656-669.  doi: 10.24272/j.issn.2095-8137.2020.254
    [2] Zia Ur Rahman, Yu-Chun Li, Jiao-Yang Tian, Qing-Peng Kong. Exploring European ancestry among the Kalash population: a mitogenomic perspective. Zoological Research, 2020, 41(5): 552-556.  doi: 10.24272/j.issn.2095-8137.2020.052
    [3] Rui-Rui GAO, Yuan HUANG, Fu-Min LEI. Sequencing and analysis of the complete mitochondrial genome of Remiz consobrinus. Zoological Research, 2013, 34(3): 228-237.  doi: 10.11813/j.issn.0254-5853.2013.3.0228
    [4] Li GONG, Wei SHI, Li-Zhen SI, Xiao-Yu KONG. Rearrangement of mitochondrial genome in fishes. Zoological Research, 2013, 34(6): 666-673.  doi: 10.11813/j.issn.0254-5853.2013.6.0666
    [5] Fang ZHAO, Dun-Yuan HUANG, Xiao-Yan SUN, Qing-Hui SHI, Jia-Sheng HAO, Lan-Lan ZHANG, Qun YANG. The first mitochondrial genome for the butterfly family Riodinidae (Abisara fylloides) and its systematic implications. Zoological Research, 2013, 34(E5): 531109.  doi: 10.11813/j.issn.0254-5853.2013.E4-5.E109
    [6] CHEN Mei, TIAN Li-Li, SHI Qing-Hui, CAO Tian-Wen, HAO Jia-Sheng. Complete mitogenome of the Lesser Purple Emperor Apatura ilia (Lepidoptera: Nymphalidae: Apaturinae) and comparison with other nymphalid butterflies. Zoological Research, 2012, (2): 191-201.  doi: 10.3724/SP.J.1141.2012.02191
    [7] TIAN Li-Li, SUN Xiao-Yan, CHEN Mei, GAI Yong-Hua, HAO Jia-Sheng, YANG Qun. Complete mitochondrial genome of the Five-dot Sergeant Parathyma sulpitia (Nymphalidae: Limenitidinae) and its phylogenetic implications. Zoological Research, 2012, (2): 133-143.  doi: 10.3724/SP.J.1141.2012.02133
    [8] Qinghui SHI, Jing XIA, Xiaoyan SUN, Jiasheng HAO, Qun YANG. Complete mitogenome of the Painted Jezebel, Delias hyparete Linnaeus (Lepidoptera: Pieridae) and its comparison with other butterfly species. Zoological Research, 2012, 33(E5-6): 111-120.  doi: 10.3724/SP.J.1141.2012.E05-06E111
    [9] Liang ZHAO, Xingtao ZHANG, Xingkui TAO, Weiwei WANG, Ming LI. Preliminary analysis of the mitochondrial genome evolutionary pattern in primates. Zoological Research, 2012, 33(E3-4): 47-56.  doi: 10.3724/SP.J.1141.2012.E03-04E47
    [10] WANG Xiao-Can, SUN Xiao-Yan, SUN Qian-Qian, ZHANG Da-Xiu, HU Jing, YANG Qun, HAO. Complete mitochondrial genome of the laced fritillary Argyreus hyperbius (Lepidoptera: Nymphalidae). Zoological Research, 2011, 32(5): 465-475.  doi: 10.3724/SP.J.1141.2011.05465
    [11] ZHONG Hua-Ming, ZHANG Hong-Hai , *, SHA Wei-Lai, ZHANG Cheng-De, CHEN Yu-Cai. Complete Mitochondrial Genome of the Red Fox (Vuples vuples) and Phylogenetic Analysis with Other Canid Species. Zoological Research, 2010, 31(2): 122-130.  doi: 10.3724/SP.J.1141.2010.02122
    [12] YANG Chao, LEI Fu-Min, HUANG Yuan. Sequencing and Analysis of the Complete Mitochondrial Genome of Pseudopodoces humilis (Aves, Paridae). Zoological Research, 2010, 31(4): 333-344.  doi: 10.3724/SP.J.1141.2010.04333
    [13] GAO Jia, CHENG Chun-hua, HUANG Yuan. Analysis of Complete Mitochondrial Genome Sequence of Aeropus licenti Chang. Zoological Research, 2009, 30(6): 603-612.  doi: 10.3724/SP.J.1141.2009.06603
    [14] JIANG Feng, MIAO Yong-wang, LIU Bin, SHEN Xin, REN Jian-feng. Mitochondrial Introgressions into the Nuclear Genome of the Domestic Horse. Zoological Research, 2008, 29(6): 577-584.  doi: 10.3724/SP.J.1141.2008.06577
    [15] YE Wei, DANG Jiang-peng, XIE Ling-de, HUANG Yuan. Complete Mitochondrial Genome of Teleogryllus emma (Orthoptera: Gryllidae) with a New Gene Order in Orthoptera. Zoological Research, 2008, 29(3): 236-244.  doi: 10.3724/SP.J.1141.2008.03236
    [16] DING Fang-mei, SHI Hong-wen, HUANG Yuan. Complete Mitochondrial Genome and Secondary Structures of lrRNA and srRNA of Atractomorpha sinensis (Orthoptera, Pyrgomorphidae). Zoological Research, 2007, 28(6): 580-588.
    [17] SUN Hong-ying, ZHOU Kai-ya, SONG Da-xiang. Mitochondrial Genome and Phylogenetic Reconstruction of Arthropods. Zoological Research, 2003, 24(6): 467-479.
    [18] ZHANG Jing, GU Bao-hong, PENG Shou-li, LIU Ci-quan. Distributions of Triplet Codons in Messenger RNA Secondary Structures. Zoological Research, 1998, 19(5): 350-358.
    [19] LI Qing-wei, CHEN Yi-feng. Enlarge The Mitochondrial Genome in Bird. Zoological Research, 1996, 17(4): 376-384.
    [20] LIU Ci-quan, WANG Ying, ZHOU Ming-pei, LI Jing-yan. Studies of 5S RNA Secondary Structure 1.A microcomputer method on the basis of the Fox model. Zoological Research, 1984, 5(1): 79-90.
  • 加载中

Catalog

    通讯作者: 陈斌, bchen63@163.com
    • 1. 

      沈阳化工大学材料科学与工程学院 沈阳 110142

    1. 本站搜索
    2. 百度学术搜索
    3. 万方数据库搜索
    4. CNKI搜索

    Article Metrics

    Article views (1686) PDF downloads(1764) Cited by()
    Proportional views
    Related

    /

    DownLoad:  Full-Size Img  PowerPoint
    Return
    Return