Citation: | Bo-Rong LU, Ming-Zhen MA, Feng GAO, Yu-Hong SHI, Xiang-Rui CHEN. Morphology and molecular phylogeny of two colepid species from China, Coleps amphacanthus Ehrenberg, 1833 and Levicoleps biwae jejuensis Chen et al., 2016 (Ciliophora, Prostomatida). Zoological Research, 2016, 37(3): 176-185. doi: 10.13918/j.issn.2095-8137.2016.3.176 |
[1] |
Chen XR, Warren A, Song WB. 2009. Taxonomic studies on a new marine ciliate, Apocoleps magnus gen. nov., spec. nov. (Ciliophora, Colepidae), isolated from Qingdao, China. Journal of Ocean University of China, 8(4):317-321.
|
[2] |
Chen XR, Wang YG, Long HA, Al-Rasheid KAS, Warren A, Song WB. 2010. Morphological studies on two marine colepid ciliates from Qingdao, China, Nolandia orientalis spec. nov. and Pinacocoleps similis (Kahl, 1933) comb. nov. (Ciliophora, Colepidae). European Journal of Protistology, 46(4):254-262.
|
[3] |
Chen XR, Gao S, Liu WW, Song WB, Al-Rasheid KAS, Warren A. 2012. Taxonomic descriptions of three marine colepid ciliates, Nolandia sinica spec. nov., Apocoleps caoi spec. nov. and Tiarina fusa (Claparède & Lachmann, 1858) Bergh, 1881 (Ciliophora, Prorodontida). International Journal of Systematic and Evolutionary Microbiology, 62(3):735-744.
|
[4] |
Chen XR, Shazib SUA, Kim JH, Shin MK. 2016. Morphological description and molecular phylogeny of two species of Levicoleps (Ciliophora, Prostomatida), L. taehwae nov. spec. and L. biwae jejuensis nov. subspec., collected in Korea. The Journal of Eukaryotic Microbiology, doi: 10.1111/jeu.12291.
|
[5] |
Corliss JO. 1979. The Ciliated Protozoa:Characterization, Classification and Guide to the Literature. 2nd ed. Oxford:Pergamon Press.
|
[6] |
Dragesco J, Dragesco-Kernéis A. 1991. Free-living ciliates from the coastal area of Lake Tanganyika (Africa). European Journal of Protistology, 26(3-4):216-235.
|
[7] |
Ehrenberg CG. 1833. Dritter Beitrag zur Erkenntniss grosser Organisation in der Richtung des kleinsten Raumes. Berlin:Abhandlungen der Preussischen Akademie der Wissenschaften (Berlin) aus den Jahre.
|
[8] |
Finlay BJ, Fenchel T. 1996. Ecology:role of ciliates in the natural environment. In:Hausmann K, Bradbury PC. Ciliates:Cells As Organisms. Stuttgart:Gustav Fischer.
|
[9] |
Foissner W. 1983. Taxonomische studien über die Ciliaten des Großglocknergebietes(Hohe Tauren, Österreich) I. Familien holophryidae, prorodontidae, plagiocampidae, colepidae, enchelyidae und lacrymariidae nov. fam. Annalen des Naturhistorischen Museums in Wien. Serie B für Botanik und Zoologie, 84B:49-85.
|
[10] |
Foissner W. 1984. Infraciliatur, Silberliniensystem und Biometrie einiger neuer und wenig bekannter terrestrischer, limnischer und mariner Ciliaten(Protozoa:Ciliophora) aus den Klassen Kinetofragminophora, Colpodea und Polyhymenophora. Stapfia, 12:1-165.
|
[11] |
Foissner W, O'Donoghue PJ. 1990. Morphology and infraciliature of some freshwater ciliates (Protozoa:Ciliophora) from Western and South Australia. Invertebrate Systematics, 3(6):661-696.
|
[12] |
Foissner W, Berger H, Kohmann F. 1994. Taxonomische und ökologische Revision der Ciliaten des Saprobiensystems-Band III:Hymenostomata, Prostomatida, Nassulida. Informationsberichte des Bayerischen Landesamtes für Wasserwirtschaft, 1/94:1-548.
|
[13] |
Foissner W, Berger H, Schaumburg J. 1999. Identification and ecology of limnetic plankton ciliates. Informationsberichte des Bayerischen Landesamtes für Wasserwirtschaft, 3/99:274-300.
|
[14] |
Foissner W, Kusuoka Y, Shimano S. 2008. Morphology and gene sequence of Levicoleps biwae n. gen., n. sp. (Ciliophora, Protstomatida), a proposed endemic from the ancient Lake Biwa, Japan. The Journal of Eukaryotic Microbiology, 55(3):185-220.
|
[15] |
Hall TA. 1999. BioEdit:a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series, 41:95-98.
|
[16] |
Huttenlauch I. 1986. Morphologie und Morphogenese des Cortex von Coleps amphacanthus. Ph.D. thesis, University of Tübingen, Tübingen, 136.
|
[17] |
Huttenlauch I. 1987. Ultrastructural aspects of the somatic and buccal infraciliature of Coleps amphacanthus Ehrenberg 1833. Protoplasma, 136(2-3):191-198.
|
[18] |
Huttenlauch I, Bardele CF. 1987. Light and electron microscopical observations on the stomatogenesis of the ciliate Coleps amphacanthus Ehrenberg, 1833. The Journal of Protozoology, 34(2):183-192.
|
[19] |
Kahl A. 1930. Urtiere oder Protozoa I:Wimpertiere oder Ciliata (Infusoria) 1. Allgemeiner Teil und Prostomata. Die Tierwelt Deutschlands, 18:1-180.
|
[20] |
Kreutz M, Foissner W. 2006. The Sphagnum ponds of Simmelried in Germany:a biodiversity hot-spot for microscopic organisms. Protozoological Monographs, 3:1-267.
|
[21] |
Lynn DH. 2008. The Ciliated Protozoa:Characterization, Classification and Guide to the Literature. 3rd ed. Dordrecht:Springer Science.
|
[22] |
Medlin L, Elwood HJ, Stickel S, Sogin ML. 1988. The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions. Gene, 71(2):491-499.
|
[23] |
Noland LE. 1925. A review of the genus Coleps with descriptions of two new species. Transactions of the American Microscopical Society, 44(1):3-13.
|
[24] |
Nylander JAA. 2004. MrModeltest Version 2. Uppsala:Evolutionary Biology Centre, Uppsala University.
|
[25] |
Obolkina LA. 1995. New species of the family Colepidae (Prostomatida, Ciliophora) from Lake Baikal. Zoologlchesky Zhurnal, 74(9):3-19.
|
[26] |
Posada D, Crandall KA. 1998. Modeltest:testing the model of DNA substitution. Bioinformatics, 14(9):817-818.
|
[27] |
Ronquist F, Huelsenbeck JP. 2003. MrBayes 3:Bayesian phylogenetic inference under mixed models. Bioinformatics, 19(12):1572-1574.
|
[28] |
Shimodaira H. 2002. An approximately unbiased test of phylogenetic tree selection. Systematic Biology, 51:492-508.
|
[29] |
Shimodaira H, Hasegawa M. 2001. CONSEL:for assessing the confidence of phylogenetic tree selection. Bioinformatics, 17(12):1246-1247.
|
[30] |
Song WB, Warren A, Hu XZ. 2009. Free-living Ciliates in the Bohai and Yellow Seas, China. Beijing:Science Press.
|
[31] |
Stamatakis A, Hoover P, Rougemont J. 2008. A rapid bootstrap algorithm for the RAxML Web servers. Systematic Biology, 57(5):758-771.
|
[32] |
Swofford DL. 2003. PAUP*. Phylogenetic analysis using parsimony (*and other methods). Version 4. http://www.paup.csit.fsu.edu/.
|
[33] |
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. 2011. MEGA5:Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution, 28(10):2731-2739.
|
[34] |
Wilbert N. 1975. Eine verbesserte technik der protargol-imprägnierung für ciliaten. Mikrokosmos, 64(6):171-179.
|
[35] |
Yi ZZ, Dunthorn M, Song WB, Stoeck T. 2010. Increasing taxon sampling using both unidentified environmental sequences and identified cultures improves phylogenetic inference in the Prorodontida (Ciliophora, Prostomatea). Molecular Phylogenetics and Evolution, 57(2):937-941.
|