GAO Yue-Dong, HUANG Jing-Fei. 2011. An extension strategy of Discovery Studio 2.0 for non-bonded interaction energy automatic calculation at the residue level. Zoological Research, 32(3): 262-266. DOI: 10.3724/SP.J.1141.2011.03262
Citation: GAO Yue-Dong, HUANG Jing-Fei. 2011. An extension strategy of Discovery Studio 2.0 for non-bonded interaction energy automatic calculation at the residue level. Zoological Research, 32(3): 262-266. DOI: 10.3724/SP.J.1141.2011.03262

An extension strategy of Discovery Studio 2.0 for non-bonded interaction energy automatic calculation at the residue level

  • Non-bonded interaction forces play crucial roles in molecular recognition and binding in biological systems.However, it is difficult for traditional methods to automatically calculate and batch the non-bonded energy at the residue level. In recent years, many studies have focused on non-bonded interactions and developed tools to calculate and analyze such interactions. In this study, we present a highly automated approach for the calculation of non-bonded energy. Our strategy invoked protocols relevant to non-bonded interactions within Discovery Studio 2.0 (DS2.0, Accelrys Inc.) bottom module using Perl script, and determined the direct command line operation of calculating non-bonded interaction energy batches without accessing the graphical interface of DS. This approach extended the DS2.0 module and was applied to a recent study of complex structure analysis.
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