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零售草鱼(Ctenopharyngodon idella)源产NDM-5肠杆菌科细菌特征及携带blaNDM-5基因的IncHI2质粒在鸭和鱼之间转移的证据

Characterization of NDM-5-producing Enterobacteriaceae isolates from retail grass carp (Ctenopharyngodon idella) and evidence of blaNDM-5-bearing IncHI2 plasmid transfer between ducks and fish

  • 摘要: 我们旨在对中国广州零售水产品中产NDM-5的肠杆菌科细菌进行调查。对2019年采集的196份草鱼肠道样品进行碳青霉烯酶基因筛查,通过药物敏感性试验、接合试验、Illumina HiSeq和Nanopore测序的方法研究blaNDM-5阳性菌和质粒的特征。结果从7份(3.57%,7/196)鱼肠样品中筛选到blaNDM-5阳性菌株,包括1株弗氏柠檬酸杆菌和6株大肠杆菌。blaNDM-5基因位于IncX3(n=5)、IncHI2(n = 1)和IncHI2-IncF(n = 1)型质粒上,这些质粒的接合频率为~10-4–10-6。序列分析结果显示,IncHI2质粒pHNBYF33-1与GenBank中广东鸭源携带blaNDM-5基因的IncHI2质粒相似。在携带blaNDM-5的IncHI2质粒中,blaNDM-5均位于一种新型转座子Tn7051(IS3000-ΔISAba125-IS5-ΔISAba125-blaNDM-5-bleMBL-trpF-tat-∆dct-IS26-∆umuD-∆ISKox3-IS3000),该结构与IncX3质粒中的blaNDM-5基因环境相似。IncHI2-IncF型杂合质粒pHNTH9F11-1是由携带blaNDM-5的IncHI2质粒和携带重金属耐受基因的IncF型质粒通过∆Tn1721转座子同源重组形成。据我们所知,这是首次对中国淡水鱼中blaNDM-5质粒的特征进行分析;考虑到广东常见的鸭-鱼混养模式,推测携带blaNDM-5的IncHI2质粒pHNBYF33-1可能是来源于鸭; Tn7051可能介导blaNDM-5在肠杆菌科细菌中从IncX3质粒转移到IncHI2质粒,从而导致blaNDM-5向不同质粒传播载体扩散。

     

    Abstract: We aimed to characterize NDM-5-producing Enterobacteriaceae from aquatic products in Guangzhou, China. A total of 196 intestinal samples of grass carp collected in 2019 were screened for carbapenemase genes. Characterization of blaNDM-5 positive isolates and plasmids was determined by antimicrobial susceptibility testing, conjugation experiments, Illumina HiSeq, and Nanopore sequencing. One Citrobacter freundii and six Escherichia coli strains recovered from seven intestinal samples were verified as blaNDM-5 carriers (3.57%, 7/196). The blaNDM-5 genes were located on the IncX3 (n=5), IncHI2 (n=1), or IncHI2-IncF (n=1) plasmids. All blaNDM-5-bearing plasmids were transferred by conjugation at frequencies of ~10−4–10−6. Based on sequence analysis, the IncHI2 plasmid pHNBYF33-1 was similar to other blaNDM-5-carrying IncHI2 plasmids deposited in GenBank from Guangdong ducks. In all IncHI2 plasmids, blaNDM-5 was embedded in a novel transposon, Tn7051 (IS3000-ΔISAba125-IS5-ΔISAba125-blaNDM-5-bleMBL-trpF-tat-∆dct-IS26-∆umuD-∆ISKox3-IS3000), which was identical to the genetic structure surrounding blaNDM-5 found in some IncX3 plasmids. The IncHI2-IncF hybrid plasmid pHNTH9F11-1 was formed by homologous recombination of the blaNDM-5-carrying IncHI2 plasmid and a heavy-metal-resistant IncF plasmid through ∆Tn1721. To the best of our knowledge, this is the first report on the characterization of blaNDM-5-bearing plasmids in fish in China. The IncHI2 plasmid pHNBYF33-1 may be transmitted from ducks, considering the common duck-fish freshwater aquaculture system in Guangdong. Tn7051 is likely responsible for the transfer of blaNDM-5 from IncX3 to IncHI2 plasmids in Enterobacteriaceae, resulting in the expansion of transmission vectors of blaNDM-5.

     

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